@hackage flower0.6

Analyze 454 flowgrams (.SFF files)

Categories
- Bioinformatics
License
LicenseRef-GPL
Maintainer
Ketil Malde <ketil@malde.org>
Links
- Homepage
- Documentation
- No source repository
- Security
Versions
- 0.7.2 Thu, 19 Sep 2013
- 0.7 Tue, 25 Jan 2011
- 0.6.5 Sun, 12 Dec 2010
- 0.6.3 Fri, 5 Nov 2010
- 0.6.1 Mon, 25 Oct 2010
- 0.6 Fri, 22 Oct 2010

Installation
In your cabal file:
Dependencies (0)
- array >=0.1
- base >=3 && <5
- binary >=0.4 && <0.5
- bio >=0.4.7
- bytestring >=0.9.1
- cmdargs >=0.5
Dependents (1)
@hackage/acme-everything

flower - FLOWgram ExtractoR tools

The flower executable reads files in SFF-format and produces various output, including sequences with quality, or flowgram data in tabular format. By default, it outputs a textual representation of the data in the SFF-file, much like sffinfo from Roche does.

The fselect executable extracts reads from SFF-files, generating a new SFF-file with a subset of the reads based on various criteria.

Sometimes SFF files will appear to be corrupted, with all-zero blocks in the file. The frecover program ignores these and tries to resync with the file after an invalid region. This was likely a one-time bug in the 454 software, so this program is probably not so useful any more.

The Darcs repository is at http://malde.org/~ketil/biohaskell/flower.

@hackage flower0.6

Categories

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Maintainer

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Installation

Dependencies (0)

Dependents (1)