@hackage BiobaseInfernal0.5.4.1

Infernal data structures and tools

Categories
- Bioinformatics
License
GPL-3.0-only
Maintainer
choener@tbi.univie.ac.at
Links
- Homepage
- Documentation
- No source repository
- Security
Versions
- 0.8.1.0 Tue, 14 Mar 2017
- 0.7.1.0 Fri, 20 Sep 2013
- 0.7.0.1 Thu, 22 Nov 2012
- 0.7.0.0 Wed, 21 Nov 2012
- 0.6.2.0 Mon, 5 Dec 2011
- 0.6.0.1 Thu, 1 Dec 2011

Installation
In your cabal file:
Dependencies (11)
- PrimitiveArray
- attoparsec
- attoparsec-iteratee
- base >3 && <5
- bytestring
- containers
Dependents (3)
@hackage/cmv, @hackage/acme-everything, @hackage/CMCompare

Provides import and export facilities for Infernal/Rfam data formats. We include Stockholm, CM, verbose Infernal results, and tabulated Infernal results. Some small tools are included.

The VerboseHit format is slightly extended to allow simple annotations. This extension should be backward-compatible with standard-compliant parsers.

Changes in 0.5.4.1

fix-up for VH export
half-baked CM type (not useful yet)

@hackage BiobaseInfernal0.5.4.1

Categories

License

Maintainer

Links

Versions

Installation

Dependencies (11)

Dependents (3)