@hackage BiobaseFasta0.2.0.0
streaming FASTA parser
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License
GPL-3.0-only
Maintainer
choener@bioinf.uni-leipzig.de
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Installation
Tested Compilers
Dependencies (8)
- BiobaseTypes >=0.1.4 && <0.1.5
- base >=4.7 && <5.0
- bytestring
- deepseq
- lens
- resourcet >=1.0 Show all…
Dependents (5)
@hackage/RNAlien, @hackage/DnaProteinAlignment, @hackage/acme-everything, @hackage/BiobaseHTTPTools, @hackage/BlastHTTP
BiobaseFasta
A Haskell library for FASTA-file handling.
The version does streaming using the 'streaming' library.
The library is, in general, in a "preview" state. In cases where you need to scan large FASTA files fast and with low memory overhead, the functions within should already be useable enough.
The wikipedia has information on the format:
http://en.wikipedia.org/wiki/FASTA_format
Contact
Christian Hoener zu Siederdissen
Leipzig University, Leipzig, Germany
choener@bioinf.uni-leipzig.de
http://www.bioinf.uni-leipzig.de/~choener/