@hackage BiobaseFasta0.0.1.0
conduit-based FASTA parser
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License
GPL-3.0-only
Maintainer
choener@tbi.univie.ac.at
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Installation
Dependencies (6)
- base >3 && <5
- biocore >=0.2
- bytestring
- conduit >=0.5 && <0.6
- containers
- transformers Show all…
Dependents (5)
@hackage/RNAlien, @hackage/DnaProteinAlignment, @hackage/acme-everything, @hackage/BiobaseHTTPTools, @hackage/BlastHTTP
Conduit-based handling of FASTA files. This library provides a streaming interface. The user selects a window size, then handles the window. For each window, the previous (past) window is available, in case some data sits on the boundary between windows.
FastaTool is a simple tool providing information on FASTA files, and allowing to extract sequences and subsequences.
The library is, in general, in a "preview" state. In cases
where you need to scan large FASTA files fast and with low
memory overhead, the streamFasta function, however, should
already be useable enough.