@hackage BiobaseFR3D0.1.3.0
Importer for FR3D resources
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License
GPL-3.0-only
Maintainer
choener@tbi.univie.ac.at
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- Homepage
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Installation
Dependencies (5)
- BiobaseXNA >=0.5.4
- base >3 && <5
- bytestring
- filemanip
- iteratee Show all…
Dependents (2)
@hackage/BiobaseTrainingData, @hackage/acme-everything
Provides importers for FR3D resource files. Of particular interest are basepairs files which describe canonical and non-canonical (non-Watson-Crick) base pairings in RNA secondary structure.
The original FR3D paper is:
FR3D: Finding Local and Composite Recurrent Structural Motifs in RNA 3D Structures, Michael Sarver; Craig L. Zirbel; Jesse Stombaugh; Ali Mokdad; Neocles B. Leontis. /Journal of Mathematical Biology/ (2008) 56:215–252.