Debian Description Tracking --- package: dindel

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dindel

Source: dindel
Package: dindel
Versions: dindel (1.01+dfsg-1), dindel (1.01+dfsg-2), dindel (1.01+dfsg-3), dindel (1.01+dfsg-3+b1), dindel (1.01+dfsg-4), dindel (1.01+dfsg-4+b1), dindel (1.01-wu1-3+dfsg-1), dindel (1.01-wu1-3+dfsg-1+b1), dindel (1.01-wu1-3+dfsg-1+b2), dindel (1.01-wu1-3+dfsg-2), dindel (1.01-wu1-3+dfsg-2+b1)
Prioritize: 45
Description: determines indel calls from short-read data
 Dindel is a program for calling small indels from short-read sequence
 data ('next generation sequence data'). It currently is designed to
 handle only Illumina data.
 .
 Dindel requires a BAM file containing the read-alignments as input. It
 then extracts candidate indels from the BAM file, and realigns the reads
 to candidate haplotypes consisting of these candidate indels. If there
 is sufficient evidence for an alternative haplotype to the reference,
 it will call an indel.
 .
 It is possible to test indels discovered with other methods using Dindel,
 for instance longer indels obtained through assembly methods. Dindel
 will then realign both mapped and unmapped reads to see if the candidate
 indel is supported by the reads.
 .
 Dindel outputs both genotype likelihoods and includes a script to
 convert these to a VCF file with indel and SNP calls.
 .
 There is basic support for outputting realigned BAM files for each
 realignment-window. These realigned BAM files can be used to call SNPs
 near (candidate) indels.

This Description was in bullseye from 2020-03-03 to 2021-02-09;
This Description was in sid from 2016-03-24 to 2021-02-09;
This Description was in buster from 2017-07-28 to 2022-09-13;
This Description was in stretch from 2016-04-03 to 2020-07-21;

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parts-md5sum:

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e8e2e279caac7ce80609a87c74668686 da it     
deae84a9669db489555ae5e34d3aabe9 da it

dindel

other Descriptions of the dindel package: