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discosnp
Source: discosnp
Package: discosnp
Versions: discosnp (1.0.1-1), discosnp (1.0.1-3), discosnp (1.2.1-1), discosnp (1.2.2-1), discosnp (1.2.3-1), discosnp (1.2.5-1), discosnp (1.2.6-1), discosnp (1.2.6-1+b1), discosnp (1.2.6-1+b2)
Prioritize: 45
Description: discovering Single Nucleotide Polymorphism from raw set(s) of reads
Software discoSnp is designed for discovering Single Nucleotide
Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation
Sequencers (NGS).
.
Note that number of input read sets is not constrained, it can be one, two,
or more. Note also that no other data as reference genome or annotations
are needed.
.
The software is composed by two modules. First module, kissnp2, detects SNPs
from read sets. A second module, kissreads, enhance the kissnp2 results by
computing per read set and for each found SNP:
1) its mean read coverage
2) the (phred) quality of reads generating the polymorphism.
This Description was in jessie from 2014-02-18 to 2018-06-26;
This Description was in stretch from 2015-05-03 to 2020-07-21;
This Description was in buster from 2017-07-28 to 2017-11-19;
This Description was in sid from 2014-02-06 to 2017-11-14;
This Description is not yet translated to ar
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This Description is translated to da
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This Description is not yet translated to fi
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This Description is not yet translated to zh_CN
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parts-md5sum:
6caf8efd0414fae15a7d385e68fbc4f1 da fr it 255168
45dd0baccf32544a56f7e190bd1e43f6 da fr it 255168
bd13f3465b45da4cb9cc753a817c1e0e da fr it 255168
28516384f81e9004f77a0d6bdb054210 da it
other Descriptions of the discosnp package:
Description: 255168
patch
This Description is active
This Description was in forky from 2025-08-10 to 2026-08-10;
This Description was in sid from 2017-11-15 to 2026-09-01;
This Description was in trixie from 2023-06-12 to 2026-07-13;
This Description was in bullseye from 2020-04-25 to 2024-09-02;
This Description was in bookworm from 2021-08-18 to 2026-07-13;
This Description was in buster from 2017-11-20 to 2022-09-13;